Amber skin not remembering settings

I have tried this multiple times, and it always resets.

I disable menu items in Krypton with the latest available Amber skin. Fresh install because the update hosed my SD card on my Raspberry Pi.

Upon coming back 10 minutes later, I find menu items re-enabled. How do I fix this? This doesnt happen on the RPi that successfully updated to Krypton and the newest skin.